OK, put the original OEM ignition switch back in the bike and plug it back into the harness. Put the original ignition coil back in the bike and plug it back in.
Remove the CDI from the bike.
If there is any reason why you can't put the original ignition switch back in it (lost key or whatever...?) let me know before we begin testing. Then...
1st step (this is precautionary, making sure the correct switches are on the bike):
Turn the ignition switch to the "ON" position. Put the kill switch on the handlebar in the "Run" position. Set your multimeter mode to DC volts.
Now, at the CDI connector plug, hold the red multimeter lead on the Black wire with a White stripe (Bl/W) terminal in the CDI plug, while holding the black multimeter lead on a frame or engine ground. There should be 0 volts DC shown on your meter. If you get a voltage reading stop testing and tell me. If you read 0 volts continue...
2nd Step:
Leave the ignition switch turned on and the kill switch in the run position. Set your multimeter to the ohms test mode or the continuity test mode, depending on how your meter works... Again, at the CDI connector plug, hold the red multimeter lead on the Black wire with a White stripe (Bl/W) terminal in the CDI plug, while holding the black multimeter lead on a frame or engine ground. Your meter should show 0L (or 0 ohms) and no continuity. Report back with your findings for this test.